Forget everything you know about dry, chalky protein snacks. These Cinnamon Roll Protein Muffins are here to completely change the game. Imagine sinking your teeth into a soft, fluffy muffin with a gooey cinnamon swirl, topped with a luscious protein cream cheese frosting. It’s the decadent flavor of your favorite bakery treat, but packed with enough protein to power your morning or crush your post-workout cravings. We’ve cracked the code to making baked goods with protein powder that are not just good for you, but genuinely delicious.
This recipe is your new secret weapon for healthy meal prep. They are incredibly easy to whip up a batch on Sunday and have a grab-and-go breakfast ready for the entire week. Say goodbye to boring protein shakes and hello to a breakfast you’ll actually look forward to.
Why You’ll Love This Cinnamon Roll Protein Muffins Recipe
If you’re looking for the perfect blend of flavor and function, look no further. This isn’t just another healthy muffin recipe; it’s a game-changer for your breakfast and snack routine.
- High in Protein: Each muffin is packed with protein, making it a satisfying and filling option that helps you meet your fitness goals without sacrificing taste.
- Incredibly Moist & Fluffy: We use a combination of Greek yogurt and just the right flour blend to combat the dryness often found in protein baked goods. The result is a perfectly tender crumb.
- Authentic Cinnamon Roll Flavor: A rich, buttery cinnamon-sugar swirl runs through the center, delivering that classic cinnamon roll experience in every single bite.
- Perfect for Meal Prep: This recipe is designed for busy lifestyles. Bake a dozen and have a delicious, high-protein breakfast or snack ready for days.
- Easy to Make: With straightforward instructions and simple ingredients, even beginner bakers can achieve bakery-quality results.

The Secret to Moist Protein Muffins: Key Ingredients
The magic of these muffins lies in a carefully selected combination of ingredients. Each one plays a crucial role in creating a final product that’s moist, flavorful, and packed with protein. Understanding these components will help you perfect your muffins every time.
Choosing Your Protein Powder
The type of protein powder you use is critical. We recommend a whey or a whey-casein blend for the best texture in baking, as it tends to be less drying than other types. Vanilla-flavored protein powder works best as it complements the cinnamon and vanilla in the recipe, creating a cohesive, dessert-like flavor profile. If you only have unflavored, you may want to add an extra splash of vanilla extract.
The Flour Blend
We use a simple all-purpose flour for a light, classic muffin texture. However, for a nutrient boost, you can substitute half of the all-purpose flour with whole wheat or oat flour. If you’re looking for a gluten-free option, a good quality 1-to-1 gluten-free baking flour will also work well in this recipe. Just be sure it contains xanthan gum. If you’re looking for another gluten-free baked good, try these delicious gluten-free oatmeal cookies.
Natural Sweeteners & Moisture
To keep the muffins healthy and refined-sugar-free, we use pure maple syrup as the primary sweetener. It adds a wonderful flavor that pairs beautifully with cinnamon. The real key to moisture, however, is Greek yogurt. It adds protein, a slight tang, and ensures the muffins stay incredibly tender.
Step-by-Step Guide to Perfect Muffins
Follow these simple steps to create flawless Cinnamon Roll Protein Muffins from scratch. We’ll break it down into preparing the batter, mixing the cinnamon swirl, and assembling for a perfect bake.
1. Prepare the Muffin Batter
Start by preheating your oven to 350°F (175°C) and lining a muffin tin with 12 paper liners. In a large bowl, whisk together the dry ingredients: flour, vanilla protein powder, baking powder, baking soda, and salt. In a separate, medium-sized bowl, whisk the wet ingredients: Greek yogurt, eggs, maple syrup, melted coconut oil, and vanilla extract until smooth. Gently pour the wet ingredients into the dry ingredients and fold with a spatula until just combined. Be careful not to overmix; a few lumps are perfectly fine!
2. Create the Cinnamon Swirl
In a small bowl, mix together the melted butter, brown sugar substitute (or coconut sugar), and a generous amount of ground cinnamon. Stir until it forms a thick, paste-like consistency. This rich, buttery swirl is what gives the muffins their signature cinnamon roll character.

3. Assemble and Bake
Spoon about one tablespoon of batter into the bottom of each muffin liner. Next, add about a teaspoon of the cinnamon swirl mixture on top of the batter. Then, top with the remaining muffin batter, filling each liner about three-quarters of the way full. Use a toothpick or a skewer to gently swirl the cinnamon mixture into the batter. Bake for 18-22 minutes, or until a toothpick inserted into the center comes out clean. Allow the muffins to cool in the pan for a few minutes before transferring them to a wire rack to cool completely.
The Ultimate Protein Cream Cheese Frosting
A cinnamon roll isn’t complete without its frosting, and our protein-packed version is the perfect finishing touch. In a medium bowl, beat together softened cream cheese, a scoop of vanilla protein powder, a little maple syrup, and a splash of milk until it’s smooth and creamy. If it’s too thick, add milk one teaspoon at a time until you reach your desired consistency. Once the muffins have cooled completely, spread or pipe this delicious, tangy frosting over the top.
For those who love a good dessert, our Pecan Pie Cheesecake is another must-try recipe.
Tips for Recipe Success
To ensure your muffins turn out perfectly every single time, keep these simple tips in mind.
- Do Not Overmix: Overmixing the batter develops the gluten in the flour, which can lead to tough, dense muffins. Mix only until the wet and dry ingredients are just combined.
- Cool Completely Before Frosting: This is crucial! If you frost the muffins while they’re still warm, the cream cheese frosting will melt and slide right off. Patience is key.
- Room Temperature Ingredients: For a smoother, more uniform batter, use room temperature eggs and Greek yogurt. This helps the ingredients emulsify better, creating a lighter texture.
Storage and Meal Prep Instructions
These muffins are an excellent choice for meal prep. To store, place them in an airtight container. If they are frosted, it’s best to store them in the refrigerator for up to 5 days. If they are unfrosted, you can store them at room temperature for up to 3 days. For longer storage, you can freeze the unfrosted muffins for up to 3 months. Simply thaw at room temperature or gently warm in the microwave before frosting and serving. They make a great quick breakfast, similar to our popular Apple Cinnamon Breakfast Quesadillas.
Frequently Asked Questions
Yes, they freeze beautifully! For best results, freeze them without the frosting in a freezer-safe bag or container for up to 3 months. Thaw at room temperature and then add the frosting before serving.
Yes, absolutely! You can substitute the all-purpose flour with a high-quality 1-to-1 gluten-free baking flour. Ensure the blend you choose contains xanthan gum to provide structure.
The key to moist protein muffins is adding ingredients with high moisture content. In this recipe, we use Greek yogurt and melted coconut oil. It’s also critical not to over-bake them and to measure your flour and protein powder correctly.
Store the frosted muffins in an airtight container in the refrigerator for up to 5 days. If they are unfrosted, they can be stored at room temperature for up to 3 days.
A whey or whey-casein blend protein powder is generally best for baking as it helps maintain moisture. Plant-based proteins can sometimes be more absorbent and may require you to add a little extra liquid to the batter.
More Healthy Recipes To Try
If you loved these protein muffins, be sure to explore some of our other delicious and healthy recipes. For a savory and satisfying meal, check out our High-Protein Egg Roll in a Bowl or the flavorful Honey Garlic Air Fryer Tofu.
Share Your Creations!
We are so excited for you to try this Cinnamon Roll Protein Muffins recipe! We know it will become a new favorite in your household. If you make them, please leave a comment below and let us know what you think. And don’t forget to share a picture of your beautiful muffins on Pinterest! Your feedback and shares help our community grow.

Cinnamon Roll Protein Muffins Recipe

Cinnamon Roll Protein Muffins (That Are Actually Moist!)
Ingredients
Equipment
Instructions
- Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners.
- In a large bowl, whisk together the flour, 1 cup of vanilla protein powder, baking powder, baking soda, and salt.
- In a separate bowl, mix the Greek yogurt, eggs, maple syrup, melted coconut oil, and vanilla extract until well combined.
- Pour the wet ingredients into the dry ingredients and gently fold until just combined. Do not overmix.
- In a small bowl, prepare the cinnamon swirl by mixing the melted butter, brown sugar substitute, and cinnamon until a paste forms.
- Spoon a tablespoon of batter into each muffin liner. Top with a teaspoon of the cinnamon mixture. Add the remaining batter, filling each liner about 3/4 full.
- Use a toothpick to gently swirl the cinnamon filling through the batter.
- Bake for 18-22 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Let the muffins cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
- While the muffins cool, prepare the frosting. In a medium bowl, beat the softened cream cheese, 2 tbsp vanilla protein powder, and maple syrup until smooth. Add milk, one tablespoon at a time, until you reach a spreadable consistency.
- Once the muffins are completely cool, spread the frosting on top. Enjoy immediately or store in an airtight container.
Notes
Do not overmix the batter to ensure a tender, fluffy muffin.
Allow muffins to cool completely before frosting to prevent melting.