Cinnamon Roll Protein Muffins (That Are Actually Moist!)

By Natalie Quinn

On February 18, 2026

A close-up macro shot of a single healthy cinnamon roll muffin, showcasing the fluffy texture and the rich cinnamon swirl.

Cuisine

American

Prep time

15 minutes

Cooking time

22 minutes

Total time

37 minutes

Servings

12 muffins

Forget everything you know about dry, chalky protein snacks. These Cinnamon Roll Protein Muffins are here to completely change the game. Imagine sinking your teeth into a soft, fluffy muffin with a gooey cinnamon swirl, topped with a luscious protein cream cheese frosting. It’s the decadent flavor of your favorite bakery treat, but packed with enough protein to power your morning or crush your post-workout cravings. We’ve cracked the code to making baked goods with protein powder that are not just good for you, but genuinely delicious.

This recipe is your new secret weapon for healthy meal prep. They are incredibly easy to whip up a batch on Sunday and have a grab-and-go breakfast ready for the entire week. Say goodbye to boring protein shakes and hello to a breakfast you’ll actually look forward to.

Why You’ll Love This Cinnamon Roll Protein Muffins Recipe

If you’re looking for the perfect blend of flavor and function, look no further. This isn’t just another healthy muffin recipe; it’s a game-changer for your breakfast and snack routine.

  • High in Protein: Each muffin is packed with protein, making it a satisfying and filling option that helps you meet your fitness goals without sacrificing taste.
  • Incredibly Moist & Fluffy: We use a combination of Greek yogurt and just the right flour blend to combat the dryness often found in protein baked goods. The result is a perfectly tender crumb.
  • Authentic Cinnamon Roll Flavor: A rich, buttery cinnamon-sugar swirl runs through the center, delivering that classic cinnamon roll experience in every single bite.
  • Perfect for Meal Prep: This recipe is designed for busy lifestyles. Bake a dozen and have a delicious, high-protein breakfast or snack ready for days.
  • Easy to Make: With straightforward instructions and simple ingredients, even beginner bakers can achieve bakery-quality results.
The process of making cinnamon roll protein muffins, showing the cinnamon swirl mixture being added to the muffin batter before baking.
The secret is in the swirl! Layering the cinnamon filling is key to getting that perfect gooey center.

The Secret to Moist Protein Muffins: Key Ingredients

The magic of these muffins lies in a carefully selected combination of ingredients. Each one plays a crucial role in creating a final product that’s moist, flavorful, and packed with protein. Understanding these components will help you perfect your muffins every time.

Choosing Your Protein Powder

The type of protein powder you use is critical. We recommend a whey or a whey-casein blend for the best texture in baking, as it tends to be less drying than other types. Vanilla-flavored protein powder works best as it complements the cinnamon and vanilla in the recipe, creating a cohesive, dessert-like flavor profile. If you only have unflavored, you may want to add an extra splash of vanilla extract.

The Flour Blend

We use a simple all-purpose flour for a light, classic muffin texture. However, for a nutrient boost, you can substitute half of the all-purpose flour with whole wheat or oat flour. If you’re looking for a gluten-free option, a good quality 1-to-1 gluten-free baking flour will also work well in this recipe. Just be sure it contains xanthan gum. If you’re looking for another gluten-free baked good, try these delicious gluten-free oatmeal cookies.

Natural Sweeteners & Moisture

To keep the muffins healthy and refined-sugar-free, we use pure maple syrup as the primary sweetener. It adds a wonderful flavor that pairs beautifully with cinnamon. The real key to moisture, however, is Greek yogurt. It adds protein, a slight tang, and ensures the muffins stay incredibly tender.

Step-by-Step Guide to Perfect Muffins

Follow these simple steps to create flawless Cinnamon Roll Protein Muffins from scratch. We’ll break it down into preparing the batter, mixing the cinnamon swirl, and assembling for a perfect bake.

1. Prepare the Muffin Batter

Start by preheating your oven to 350°F (175°C) and lining a muffin tin with 12 paper liners. In a large bowl, whisk together the dry ingredients: flour, vanilla protein powder, baking powder, baking soda, and salt. In a separate, medium-sized bowl, whisk the wet ingredients: Greek yogurt, eggs, maple syrup, melted coconut oil, and vanilla extract until smooth. Gently pour the wet ingredients into the dry ingredients and fold with a spatula until just combined. Be careful not to overmix; a few lumps are perfectly fine!

2. Create the Cinnamon Swirl

In a small bowl, mix together the melted butter, brown sugar substitute (or coconut sugar), and a generous amount of ground cinnamon. Stir until it forms a thick, paste-like consistency. This rich, buttery swirl is what gives the muffins their signature cinnamon roll character.

A close-up macro shot of a single healthy cinnamon roll muffin, showcasing the fluffy texture and the rich cinnamon swirl.
Look at that perfect cinnamon swirl! This is what a healthy treat should look like.

3. Assemble and Bake

Spoon about one tablespoon of batter into the bottom of each muffin liner. Next, add about a teaspoon of the cinnamon swirl mixture on top of the batter. Then, top with the remaining muffin batter, filling each liner about three-quarters of the way full. Use a toothpick or a skewer to gently swirl the cinnamon mixture into the batter. Bake for 18-22 minutes, or until a toothpick inserted into the center comes out clean. Allow the muffins to cool in the pan for a few minutes before transferring them to a wire rack to cool completely.

The Ultimate Protein Cream Cheese Frosting

A cinnamon roll isn’t complete without its frosting, and our protein-packed version is the perfect finishing touch. In a medium bowl, beat together softened cream cheese, a scoop of vanilla protein powder, a little maple syrup, and a splash of milk until it’s smooth and creamy. If it’s too thick, add milk one teaspoon at a time until you reach your desired consistency. Once the muffins have cooled completely, spread or pipe this delicious, tangy frosting over the top.

For those who love a good dessert, our Pecan Pie Cheesecake is another must-try recipe.

Tips for Recipe Success

To ensure your muffins turn out perfectly every single time, keep these simple tips in mind.

  • Do Not Overmix: Overmixing the batter develops the gluten in the flour, which can lead to tough, dense muffins. Mix only until the wet and dry ingredients are just combined.
  • Cool Completely Before Frosting: This is crucial! If you frost the muffins while they’re still warm, the cream cheese frosting will melt and slide right off. Patience is key.
  • Room Temperature Ingredients: For a smoother, more uniform batter, use room temperature eggs and Greek yogurt. This helps the ingredients emulsify better, creating a lighter texture.

Storage and Meal Prep Instructions

These muffins are an excellent choice for meal prep. To store, place them in an airtight container. If they are frosted, it’s best to store them in the refrigerator for up to 5 days. If they are unfrosted, you can store them at room temperature for up to 3 days. For longer storage, you can freeze the unfrosted muffins for up to 3 months. Simply thaw at room temperature or gently warm in the microwave before frosting and serving. They make a great quick breakfast, similar to our popular Apple Cinnamon Breakfast Quesadillas.

Frequently Asked Questions

Yes, they freeze beautifully! For best results, freeze them without the frosting in a freezer-safe bag or container for up to 3 months. Thaw at room temperature and then add the frosting before serving.

Yes, absolutely! You can substitute the all-purpose flour with a high-quality 1-to-1 gluten-free baking flour. Ensure the blend you choose contains xanthan gum to provide structure.

The key to moist protein muffins is adding ingredients with high moisture content. In this recipe, we use Greek yogurt and melted coconut oil. It’s also critical not to over-bake them and to measure your flour and protein powder correctly.

Store the frosted muffins in an airtight container in the refrigerator for up to 5 days. If they are unfrosted, they can be stored at room temperature for up to 3 days.

A whey or whey-casein blend protein powder is generally best for baking as it helps maintain moisture. Plant-based proteins can sometimes be more absorbent and may require you to add a little extra liquid to the batter.

More Healthy Recipes To Try

If you loved these protein muffins, be sure to explore some of our other delicious and healthy recipes. For a savory and satisfying meal, check out our High-Protein Egg Roll in a Bowl or the flavorful Honey Garlic Air Fryer Tofu.

Share Your Creations!

We are so excited for you to try this Cinnamon Roll Protein Muffins recipe! We know it will become a new favorite in your household. If you make them, please leave a comment below and let us know what you think. And don’t forget to share a picture of your beautiful muffins on Pinterest! Your feedback and shares help our community grow.

A stack of Cinnamon Roll Protein Muffins with cream cheese frosting, with one muffin cut in half to show the gooey cinnamon swirl inside. Perfect high-protein breakfast idea.
Get the best of both worlds with these incredible Cinnamon Roll Protein Muffins!

Cinnamon Roll Protein Muffins Recipe

A close-up macro shot of a single healthy cinnamon roll muffin, showcasing the fluffy texture and the rich cinnamon swirl.

Cinnamon Roll Protein Muffins (That Are Actually Moist!)

The best Cinnamon Roll Protein Muffins recipe! These soft, moist, and fluffy muffins are packed with protein, a gooey cinnamon swirl, and topped with a healthy cream cheese frosting. Perfect for a quick breakfast or a post-workout snack.
Prep Time 15 minutes
Cook Time 22 minutes
Total Time 37 minutes
Servings: 12 muffins
Course: Breakfast, Snack
Cuisine: American
Calories: 185

Ingredients
  

For the Muffins
  • 1.5 cups all-purpose flour Or a 1-to-1 gluten-free baking blend
  • 1 cup vanilla protein powder Whey or a whey-casein blend recommended
  • 2 tsp baking powder
  • 0.5 tsp baking soda
  • 0.25 tsp salt
  • 1 cup plain Greek yogurt Room temperature
  • 2 large eggs Room temperature
  • 0.5 cup maple syrup
  • 0.25 cup coconut oil Melted and cooled
  • 1 tsp vanilla extract
For the Cinnamon Swirl
  • 2 tbsp butter Melted
  • 0.25 cup brown sugar substitute e.g., erythritol or coconut sugar
  • 1 tbsp ground cinnamon
For the Protein Cream Cheese Frosting
  • 4 oz cream cheese Softened
  • 2 tbsp vanilla protein powder
  • 2 tbsp maple syrup
  • 1-2 tbsp milk As needed for consistency

Equipment

  • 1 Muffin tin
  • 2 Mixing Bowls

Instructions
 

  1. Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners.
  2. In a large bowl, whisk together the flour, 1 cup of vanilla protein powder, baking powder, baking soda, and salt.
  3. In a separate bowl, mix the Greek yogurt, eggs, maple syrup, melted coconut oil, and vanilla extract until well combined.
  4. Pour the wet ingredients into the dry ingredients and gently fold until just combined. Do not overmix.
  5. In a small bowl, prepare the cinnamon swirl by mixing the melted butter, brown sugar substitute, and cinnamon until a paste forms.
  6. Spoon a tablespoon of batter into each muffin liner. Top with a teaspoon of the cinnamon mixture. Add the remaining batter, filling each liner about 3/4 full.
  7. Use a toothpick to gently swirl the cinnamon filling through the batter.
  8. Bake for 18-22 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
  9. Let the muffins cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
  10. While the muffins cool, prepare the frosting. In a medium bowl, beat the softened cream cheese, 2 tbsp vanilla protein powder, and maple syrup until smooth. Add milk, one tablespoon at a time, until you reach a spreadable consistency.
  11. Once the muffins are completely cool, spread the frosting on top. Enjoy immediately or store in an airtight container.

Notes

For best results, use room temperature eggs and Greek yogurt.
Do not overmix the batter to ensure a tender, fluffy muffin.
Allow muffins to cool completely before frosting to prevent melting.

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